PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72553.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 342aa    MW: 37542 Da    PI: 9.199
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72553.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.66e-33542231128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee............vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 
                   lp+G++F+Ptd+el+ e+L++kv++     +                +i+   +i++++P++Lp  v+++  + +fF++ +k+y+tg+rk+r+    
  MLOC_72553.1  54 LPAGVKFDPTDQELI-EHLEAKVRSGGtsaV---AapshplidefipTIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGTRKRRKiqpp 145
                   799************.99******9995550...34555555665544776646**********.556667799******************88*** PP

           NAM  78 ..........................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                              ++ +W++tgk+++v + +g++ g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  MLOC_72553.1 146 atvdasalssagsaaagaghhqqqqqRSETRWHKTGKTRPVAV-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 223
                   *********************9998755789************.99************5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-3648142IPR003441NAC domain
PROSITE profilePS5100528.14954242IPR003441NAC domain
PfamPF023651.6E-1555223IPR003441NAC domain
SuperFamilySSF1019416.93E-36173242IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDDGATATAG GGTSGGGHHL IGSRIEEHRK YMSESSCCPR CGHKIDQKLD WVGLPAGVKF  60
DPTDQELIEH LEAKVRSGGT SAVAAPSHPL IDEFIPTIEG EDGICYTHPE KLPGVSKDGL  120
SRHFFHRPSK AYTTGTRKRR KIQPPATVDA SALSSAGSAA AGAGHHQQQQ QRSETRWHKT  180
GKTRPVAVGG RQRGCKKILV LYTNFGKHRK PEKTNWVMHQ YHLGESEEER EGELVVSKIF  240
YQTQPRQCGV GDGASVSVPA SSTGTSAMER RRVDRAGTSS ALRMTPSDMV NAAFHGTTRI  300
QDFSFAQFRN TIDEVSFDPS LQVIVDRFRL AARVQHVYLD ER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697753e-77EU969775.1 Zea mays clone 335447 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966091.11e-143PREDICTED: NAC domain-containing protein 43-like isoform X1
SwissprotO494591e-93NAC73_ARATH; NAC domain-containing protein 73
TrEMBLM0YSY10.0M0YSY1_HORVD; Uncharacterized protein
STRINGMLOC_72553.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.12e-97NAC domain containing protein 75